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Ge Gao, Ph.D.

Research Assistant Professor
Center for Bioinformatics
Life Science College
Peking University

Contact

E-mail:
Tel: +86 10 6275 1861
Fax: +86 10 6275 1861

Address

Room 601
New Life Science Building
Peking University
Beijing, P. R. China,
100871

Research Interesting

Publications

Mechanism and Evolution of Gene Regulation

  1. He K, Guo AY, Gao G, Zhu QH, Liu XC, Zhang H, Chen X, Gu XC, Luo J: Computational Identification of Plant Transcription Factors and the Construction of the PlantTFDB Database In: Computational Biology of Transcription Factors. Edited by Ladunga IS, vol. 220: Humana Press, USA, a part of the Springer publishing group; (in printing).
  2. Zhao SQ, Wang J, Zhang L, Li JT, Gu X, Gao G*, Wei L*: BOAT: Basic Oligonucleotide Alignment Tool. BMC Genomics 2009, 10 Suppl 3:S2. (*: co-corresponding authors)
  3. Zhao M, Chen X, Gao G, Tao L, Wei L: RLEdb: a database of rate-limiting enzymes and their regulation in human, rat, mouse, yeast and E. coli. Cell Res 2009, 19(6):793-795.
  4. Li Z, Zhang H, Ge S, Gu X, Gao G*, Luo J*: Expression pattern divergence of duplicated genes in rice. BMC Bioinformatics 2009, 10(Suppl 6):S8. (*: co-corresponding authors)
  5. Li Z, Liu M, Zhang L, Zhang W, Gao G, Zhu Z, Wei L, Fan Q, Long M: Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster. Nucleic Acids Res 2009.
  6. Gao G, Li JT, Kong L, Tao L, Wei L: Human herpesvirus miRNAs statistically preferentially target host genes involved in cell signaling and adhesion/junction pathways. Cell Res 2009, 19(5):665-667.
  7. Liu H, Zhu F, Yong J, Zhang P, Hou P, Li H, Jiang W, Cai J, Liu M, Cui K, Qu X, Xiang T, Lu D, Chi X, Gao G, Ji W, Ding M, Deng H: Generation of induced pluripotent stem cells from adult rhesus monkey fibroblasts. Cell Stem Cell 2008, 3(6):587-590.
  8. Guo AY, Chen X, Gao G, Zhang H, Zhu QH, Liu XC, Zhong YF, Gu X, He K, Luo J: PlantTFDB: a comprehensive plant transcription factor database. Nucleic Acids Res 2008, 36(Database issue):D966-969.
  9. Zhu QH, Guo AY, Gao G, Zhong YF, Xu M, Huang M, Luo J: DPTF: a database of poplar transcription factors. Bioinformatics 2007, 23(10):1307-1308.
  10. Zhang Y, Li J, Kong L, Gao G, Liu QR, Wei L: NATsDB: Natural Antisense Transcripts DataBase. Nucleic Acids Res 2007, 35(Database issue):D156-161.
  11. Ye ZQ, Zhao SQ, Gao G, Liu XQ, Langlois RE, Lu H, Wei L: Finding new structural and sequence attributes to predict possible disease association of single amino acid polymorphism (SAP). Bioinformatics 2007, 23(12):1444-1450.
  12. Ren L, Gao G, Zhao D, Ding M, Luo J, Deng H: Developmental stage related patterns of codon usage and genomic GC content: searching for evolutionary fingerprints with models of stem cell differentiation. Genome Biol 2007, 8(3):R35.
  13. Kong L, Zhang Y, Ye ZQ, Liu XQ, Zhao SQ, Wei L*, Gao G*: CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res 2007, 35(Web Server issue):W345-349. (*: co-corresponding authors)
  14. Gao G, Zhong Y, Guo A, Zhu Q, Tang W, Zheng W, Gu X, Wei L, Luo J: DRTF: a database of rice transcription factors. Bioinformatics 2006, 22(10):1286-1287.

Heterogeneous Data Integration and Infrustration Development

  1. Liu X, Wu J, Wang J, Zhao S, Li Z, Kong L, Gu X, Luo J*, Gao G*: WebLab: a data-centric, knowledge-sharing bioinformatic platform. Nucleic Acids Res 2009, 37(Web Server issue):W33-39. (*: co-corresponding authors)
  2. Sun Y, Zhao S, Yu H, Gao G*, Luo J*: ABCGrid: Application for Bioinformatics Computing Grid. Bioinformatics 2007, 23(9):1175-1177. (*: co-corresponding authors)

Early Publications (before 2006)

  1. Chen Y, Zhang Y, Yin Y, Gao G, Li S, Jiang Y, Gu X, Luo J: SPD--a web-based secreted protein database. Nucleic Acids Res 2005, 33(Database issue):D169-173.
  2. Zhang Y, Yin Y, Chen Y, Gao G, Yu P, Luo J, Jiang Y: PCAS--a precomputed proteome annotation database resource. BMC Genomics 2003, 4(1):42.
  3. Jiang Y, Gao G, Fang G, Gustafson EL, Laverty M, Yin Y, Zhang Y, Luo J, Greene JR, Bayne ML et al: PepPat, a pattern-based oligopeptide homology search method and the identification of a novel tachykinin-like peptide. Mamm Genome 2003, 14(5):341-349.
  4. Chen YJ, Gao G, Bao YM, Lopez R, Wu JM, Cai T, Ye ZQ, Gu XC, Luo JC: [Initial analysis of complete genome sequences of SARS coronavirus]. Yi Chuan Xue Bao 2003, 30(6):493-500.
  5. Gao G, Wu X, He K, Liu D, Yu P, Luo J: BiDMAP-A Biological Data Management and Analysis Platform. Computer Engineering 2002, 28(z1):145-153.
  6. 高歌 赵树起, 孔雷, 吴健民, 李哲, 唐汶, 罗静初: 高性能计算在基因组数据分析中的应用. 中国计算机学会通讯2006, 2(3):28-33.
  7. 孔雷, 高歌, 吴健民, 李哲, 赵树起, 唐汶, 罗静初: 基于Linux的生物信息操作环境. 中国计算机学会通讯 2006, 2(3):57-61.
  8. 方刚, 陈蕴佳, 高歌, 刘翟, 何坤, 吴昕, 顾孝诚, 罗静初: 基因组数据库简介. 遗传 2003, 25(4):440-444.