CBI Research and Development & Other Tools

Quick Links

• Gene Expression Regulation
• Bioinformatics Infrastructure
• Genome Analysis and Comparison
• Protein Families of Biomedical Signification
• Others

Gene Expression Regulation

• LSD -- Leaf Senescence Database new!
• NTAP -- NimbleGen tiling array data analysis package new!
• SeedGeneDB -- Seed Specific Gene DataBase
• RLEDB -- Rating-Limiting Enzyme regualtion database
• KARG -- Knowledgebase for Addiction Related Genes
• HomeoDB -- A Database of Homeobox Gene Diversity
• PlantTFDB -- Plant Transcription Factor Database
• CPC -- Coding Potential Calculator
• NATsDB -- Natural antisense transcripts database
• KOBAS -- KEGG Orthology Annotation System
• CEAS -- Cis-regulatory Element Annotation System
• RStGEP -- Organ-specific expression profiling of early development of rice stamen
• DEPD -- The Differentially Expressed Protein Database
• GSDS -- Gene Structure Display Server

Bioinformatics Infrastructure

• WebLab -- Your lab on the web updated!
• ABCGrid -- Application of Bioinformatics Computing Grid

Genome Analysis and Comparison

• Rice-Map -- A Map Like Rice Genome Browser and Related Resource new!
• ColinearScan -- Dynamic programming for colinearity analysis of genomes
• CVTree -- Composition Vector Tree constructs phylogeny trees
• PGAAS -- prokaryotic genome assembly assistant system
• PSMY -- Potential Synergy mapping of Yeast Genes

Protein Families of Biomedical Signification

• SynDB -- Synapse DataBase
• SPD -- Secreted Protein database
• PNDIS -- Protein Neurtoxins Database Inquiry System

Others

• Proteomics Toolkit -- Proteomics tools at ExPASy
• CVTree -- Composition Vector Tree (CVTree) constructs phylogeny trees
• RDV -- The database about Rice dwarf phytoreovirus
• RDFolder -- Prediction of RNA secondary structure
• Loops -- The database about protein loop classification
• Domains -- The database about Protein Domain